IL_5KPX_134

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5KPX|1|27|A|1801, 5KPX|1|27|C|1816, 5KPX|1|27|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_134 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.1165

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5KPX|1|27|U|1798
5KPX|1|27|G|1799
5KPX|1|27|C|1800
5KPX|1|27|A|1801
5KPX|1|27|A|1802
5KPX|1|27|A|1803
5KPX|1|27|C|1804
*
5KPX|1|27|G|1813
5KPX|1|27|G|1814
5KPX|1|27|A|1815
5KPX|1|27|C|1816
5KPX|1|27|G|1817
5KPX|1|27|U|1818
5KPX|1|27|A|1819
5KPX|1|27|U|1820
5KPX|1|27|A|1821

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2