IL_5KPX_184

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACCACCCUUUA

Length

62 nucleotides

Bulged bases

5KPX|1|27|U|2111, 5KPX|1|27|U|2118, 5KPX|1|27|A|2126, 5KPX|1|27|U|2132, 5KPX|1|27|U|2167, 5KPX|1|27|G|2168, 5KPX|1|27|A|2171, 5KPX|1|27|U|2172, 5KPX|1|27|U|2182

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPX|1|27|U|2106
5KPX|1|27|G|2107
5KPX|1|27|A|2108
5KPX|1|27|U|2109
5KPX|1|27|G|2110
5KPX|1|27|U|2111
5KPX|1|27|G|2112
5KPX|1|27|U|2113
5KPX|1|27|A|2114
5KPX|1|27|G|2115
5KPX|1|27|G|2116
5KPX|1|27|A|2117
5KPX|1|27|U|2118
5KPX|1|27|A|2119
5KPX|1|27|G|2120
5KPX|1|27|G|2121
5KPX|1|27|U|2122
5KPX|1|27|G|2123
5KPX|1|27|G|2124
5KPX|1|27|G|2125
5KPX|1|27|A|2126
5KPX|1|27|G|2127
5KPX|1|27|G|2128
5KPX|1|27|C|2129
5KPX|1|27|U|2130
5KPX|1|27|U|2131
5KPX|1|27|U|2132
5KPX|1|27|G|2133
5KPX|1|27|A|2134
5KPX|1|27|A|2135
5KPX|1|27|G|2136
5KPX|1|27|U|2137
*
5KPX|1|27|A|2154
5KPX|1|27|U|2155
5KPX|1|27|G|2156
5KPX|1|27|G|2157
5KPX|1|27|A|2158
5KPX|1|27|G|2159
5KPX|1|27|C|2160
5KPX|1|27|C|2161
5KPX|1|27|G|2162
5KPX|1|27|A|2163
5KPX|1|27|C|2164
5KPX|1|27|C|2165
5KPX|1|27|U|2166
5KPX|1|27|U|2167
5KPX|1|27|G|2168
5KPX|1|27|A|2169
5KPX|1|27|A|2170
5KPX|1|27|A|2171
5KPX|1|27|U|2172
5KPX|1|27|A|2173
5KPX|1|27|C|2174
5KPX|1|27|C|2175
5KPX|1|27|A|2176
5KPX|1|27|C|2177
5KPX|1|27|C|2178
5KPX|1|27|C|2179
5KPX|1|27|U|2180
5KPX|1|27|U|2181
5KPX|1|27|U|2182
5KPX|1|27|A|2183

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA