IL_5LI0_008

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.144

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5LI0|1|A|C|241
5LI0|1|A|U|242
5LI0|1|A|U|243
5LI0|1|A|A|244
5LI0|1|A|G|245
5LI0|1|A|U|246
5LI0|1|A|A|247
5LI0|1|A|G|248
*
5LI0|1|A|C|256
5LI0|1|A|G|257
5LI0|1|A|A|258
5LI0|1|A|A|259
5LI0|1|A|A|260
5LI0|1|A|U|261
5LI0|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15