IL_5LI0_010

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_010 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.1897

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5LI0|1|A|U|336
5LI0|1|A|A|337
5LI0|1|A|G|338
*
5LI0|1|A|C|386
5LI0|1|A|G|387
5LI0|1|A|A|388
5LI0|1|A|A|389
5LI0|1|A|A|390

Current chains

Chain A

23S ribosomal RNA

Nearby chains