IL_5LI0_013
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_013 not in the Motif Atlas
- Homologous match to IL_4WF9_017
- Geometric discrepancy: 0.1841
- The information below is about IL_4WF9_017
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5LI0|1|A|C|607
5LI0|1|A|C|608
5LI0|1|A|U|609
*
5LI0|1|A|A|618
5LI0|1|A|U|619
5LI0|1|A|G|620
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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