IL_5LI0_017

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5LI0|1|A|G|846, 5LI0|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_017 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1715

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5LI0|1|A|G|719
5LI0|1|A|A|720
5LI0|1|A|A|721
5LI0|1|A|A|722
5LI0|1|A|C|723
*
5LI0|1|A|G|844
5LI0|1|A|A|845
5LI0|1|A|G|846
5LI0|1|A|A|847
5LI0|1|A|U|848
5LI0|1|A|A|849
5LI0|1|A|G|850
5LI0|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15