IL_5LI0_025

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

5LI0|1|A|U|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_025 not in the Motif Atlas

Homologous match to IL_4WF9_030

Geometric discrepancy: 0.5003

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5LI0|1|A|A|897
5LI0|1|A|U|898
*
5LI0|1|A|A|969
5LI0|1|A|U|970
5LI0|1|A|U|971

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain Z

50S ribosomal protein L27