3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUAGGA*UUUAAAGAGUGCGUAAUAGCUCACUAG
Length
33 nucleotides
Bulged bases
5LI0|1|A|A|1132, 5LI0|1|A|U|1138
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LI0|1|A|C|1096
5LI0|1|A|U|1097
5LI0|1|A|A|1098
5LI0|1|A|G|1099
5LI0|1|A|G|1100
5LI0|1|A|A|1101
*
5LI0|1|A|U|1125
5LI0|1|A|U|1126
5LI0|1|A|U|1127
5LI0|1|A|A|1128
5LI0|1|A|A|1129
5LI0|1|A|A|1130
5LI0|1|A|G|1131
5LI0|1|A|A|1132
5LI0|1|A|G|1133
5LI0|1|A|U|1134
5LI0|1|A|G|1135
5LI0|1|A|C|1136
5LI0|1|A|G|1137
5LI0|1|A|U|1138
5LI0|1|A|A|1139
5LI0|1|A|A|1140
5LI0|1|A|U|1141
5LI0|1|A|A|1142
5LI0|1|A|G|1143
5LI0|1|A|C|1144
5LI0|1|A|U|1145
5LI0|1|A|C|1146
5LI0|1|A|A|1147
5LI0|1|A|C|1148
5LI0|1|A|U|1149
5LI0|1|A|A|1150
5LI0|1|A|G|1151

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2198 s