IL_5LI0_046
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAGUCG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_046 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.1564
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5LI0|1|A|G|1300
5LI0|1|A|U|1301
5LI0|1|A|G|1302
5LI0|1|A|A|1303
5LI0|1|A|G|1304
5LI0|1|A|U|1305
5LI0|1|A|C|1306
5LI0|1|A|G|1307
*
5LI0|1|A|U|2038
5LI0|1|A|G|2039
5LI0|1|A|A|2040
5LI0|1|A|A|2041
5LI0|1|A|A|2042
5LI0|1|A|U|2043
5LI0|1|A|C|2044
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L22
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