IL_5LI0_053

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGG*CACAC

Length

10 nucleotides

Bulged bases

5LI0|1|A|C|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_053 not in the Motif Atlas

Homologous match to IL_4WF9_122

Geometric discrepancy: 0.2728

The information below is about IL_4WF9_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67780.1

Basepair signature

cWW-cSH-L-R-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5LI0|1|A|G|1476
5LI0|1|A|U|1477
5LI0|1|A|A|1478
5LI0|1|A|G|1479
5LI0|1|A|G|1480
*
5LI0|1|A|C|1604
5LI0|1|A|A|1605
5LI0|1|A|C|1606
5LI0|1|A|A|1607
5LI0|1|A|C|1608

Current chains

Chain A

23S ribosomal RNA

Nearby chains