IL_5LI0_059

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_059 not in the Motif Atlas

Homologous match to IL_4WF9_062

Geometric discrepancy: 0.1556

The information below is about IL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5LI0|1|A|G|1695
5LI0|1|A|C|1696
5LI0|1|A|G|1697
5LI0|1|A|A|1698
5LI0|1|A|A|1699
5LI0|1|A|C|1700
*
5LI0|1|A|G|2031
5LI0|1|A|A|2032
5LI0|1|A|C|2033

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17