IL_5LI0_061

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_061 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1539

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5LI0|1|A|G|1710
5LI0|1|A|G|1711
5LI0|1|A|A|1712
5LI0|1|A|A|1713
5LI0|1|A|C|1714
5LI0|1|A|U|1715
5LI0|1|A|C|1716
5LI0|1|A|G|1717
5LI0|1|A|G|1718
*
5LI0|1|A|C|2017
5LI0|1|A|U|2018
5LI0|1|A|G|2019
5LI0|1|A|U|2020
5LI0|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L14