IL_5LI0_062

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5LI0|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_062 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1352

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5LI0|1|A|C|1730
5LI0|1|A|G|1731
5LI0|1|A|U|1732
5LI0|1|A|A|1733
5LI0|1|A|A|1734
5LI0|1|A|C|1735
*
5LI0|1|A|G|1740
5LI0|1|A|G|1741
5LI0|1|A|A|1742
5LI0|1|A|G|1743
5LI0|1|A|A|1744
5LI0|1|A|A|1745
5LI0|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA