IL_5LI0_064

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCG*CGAUU

Length

9 nucleotides

Bulged bases

5LI0|1|A|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_064 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.229

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LI0|1|A|A|1796
5LI0|1|A|G|1797
5LI0|1|A|C|1798
5LI0|1|A|G|1799
*
5LI0|1|A|C|2006
5LI0|1|A|G|2007
5LI0|1|A|A|2008
5LI0|1|A|U|2009
5LI0|1|A|U|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA