IL_5LI0_065

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5LI0|1|A|U|1828, 5LI0|1|A|U|1843, 5LI0|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1409

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5LI0|1|A|U|1825
5LI0|1|A|G|1826
5LI0|1|A|C|1827
5LI0|1|A|U|1828
5LI0|1|A|A|1829
5LI0|1|A|A|1830
5LI0|1|A|A|1831
*
5LI0|1|A|U|1840
5LI0|1|A|G|1841
5LI0|1|A|A|1842
5LI0|1|A|U|1843
5LI0|1|A|G|1844
5LI0|1|A|U|1845
5LI0|1|A|A|1846
5LI0|1|A|U|1847
5LI0|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA