IL_5LI0_088

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

5LI0|1|A|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_088 not in the Motif Atlas

Homologous match to IL_5J7L_334

Geometric discrepancy: 0.4486

The information below is about IL_5J7L_334

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5LI0|1|A|U|2428
5LI0|1|A|U|2429
5LI0|1|A|C|2430
*
5LI0|1|A|G|2441
5LI0|1|A|G|2442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33 2

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15