3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UU*AUAG
Length
6 nucleotides
Bulged bases
5LI0|1|A|U|2739, 5LI0|1|A|A|2740
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LI0_103 not in the Motif Atlas
Homologous match to IL_4WF9_103
Geometric discrepancy: 0.1536
The information below is about IL_4WF9_103
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

5LI0|1|A|U|2722
5LI0|1|A|U|2723
*
5LI0|1|A|A|2738
5LI0|1|A|U|2739
5LI0|1|A|A|2740
5LI0|1|A|G|2741

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L17
Chain S
50S ribosomal protein L19

Coloring options:


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