IL_5LI0_109

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGA*UGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_109 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.167

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5LI0|1|B|G|5
5LI0|1|B|U|6
5LI0|1|B|G|7
5LI0|1|B|A|8
*
5LI0|1|B|U|107
5LI0|1|B|G|108
5LI0|1|B|C|109
5LI0|1|B|C|110

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L18