IL_5LI0_111
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGUCACA*UUAAGGU
- Length
- 15 nucleotides
- Bulged bases
- 5LI0|1|B|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_111 not in the Motif Atlas
- Homologous match to IL_4WF9_113
- Geometric discrepancy: 0.2713
- The information below is about IL_4WF9_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19048.1
- Basepair signature
- cWW-L-R-L-R-L-cSH-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5LI0|1|B|A|20
5LI0|1|B|G|21
5LI0|1|B|G|22
5LI0|1|B|U|23
5LI0|1|B|C|24
5LI0|1|B|A|25
5LI0|1|B|C|26
5LI0|1|B|A|27
*
5LI0|1|B|U|53
5LI0|1|B|U|54
5LI0|1|B|A|55
5LI0|1|B|A|56
5LI0|1|B|G|57
5LI0|1|B|G|58
5LI0|1|B|U|59
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
Coloring options: