IL_5LI0_131

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_131 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1992

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LI0|1|a|U|417
5LI0|1|a|G|418
5LI0|1|a|A|419
5LI0|1|a|U|420
5LI0|1|a|G|421
5LI0|1|a|A|422
5LI0|1|a|A|423
5LI0|1|a|G|424
*
5LI0|1|a|C|435
5LI0|1|a|G|436
5LI0|1|a|U|437
5LI0|1|a|A|438
5LI0|1|a|A|439
5LI0|1|a|A|440
5LI0|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4