3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGAUGAAG*CGUAAAA
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LI0_131 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1992
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

5LI0|1|a|U|417
5LI0|1|a|G|418
5LI0|1|a|A|419
5LI0|1|a|U|420
5LI0|1|a|G|421
5LI0|1|a|A|422
5LI0|1|a|A|423
5LI0|1|a|G|424
*
5LI0|1|a|C|435
5LI0|1|a|G|436
5LI0|1|a|U|437
5LI0|1|a|A|438
5LI0|1|a|A|439
5LI0|1|a|A|440
5LI0|1|a|A|441

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4

Coloring options:


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