IL_5LI0_133
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5LI0|1|a|A|540, 5LI0|1|a|U|542, 5LI0|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LI0_133 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.4037
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5LI0|1|a|G|523
5LI0|1|a|U|524
5LI0|1|a|G|525
5LI0|1|a|C|526
5LI0|1|a|C|527
5LI0|1|a|A|528
5LI0|1|a|G|529
*
5LI0|1|a|C|536
5LI0|1|a|G|537
5LI0|1|a|G|538
5LI0|1|a|U|539
5LI0|1|a|A|540
5LI0|1|a|A|541
5LI0|1|a|U|542
5LI0|1|a|A|543
5LI0|1|a|C|544
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: