3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUAGGCGAAGCGUGCGAUUGGAUUGCACGU*GGAGAAGACAUUGAGUCUUCGAGUCGUUGAUUU
Length
63 nucleotides
Bulged bases
5LI0|1|A|A|1489, 5LI0|1|A|A|1497, 5LI0|1|A|U|1503, 5LI0|1|A|G|1577, 5LI0|1|A|A|1580, 5LI0|1|A|G|1583, 5LI0|1|A|A|1584, 5LI0|1|A|G|1585, 5LI0|1|A|U|1602
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LI0|1|A|A|1481
5LI0|1|A|U|1482
5LI0|1|A|A|1483
5LI0|1|A|G|1484
5LI0|1|A|G|1485
5LI0|1|A|C|1486
5LI0|1|A|G|1487
5LI0|1|A|A|1488
5LI0|1|A|A|1489
5LI0|1|A|G|1490
5LI0|1|A|C|1491
5LI0|1|A|G|1492
5LI0|1|A|U|1493
5LI0|1|A|G|1494
5LI0|1|A|C|1495
5LI0|1|A|G|1496
5LI0|1|A|A|1497
5LI0|1|A|U|1498
5LI0|1|A|U|1499
5LI0|1|A|G|1500
5LI0|1|A|G|1501
5LI0|1|A|A|1502
5LI0|1|A|U|1503
5LI0|1|A|U|1504
5LI0|1|A|G|1505
5LI0|1|A|C|1506
5LI0|1|A|A|1507
5LI0|1|A|C|1508
5LI0|1|A|G|1509
5LI0|1|A|U|1510
*
5LI0|1|A|G|1571
5LI0|1|A|G|1572
5LI0|1|A|A|1573
5LI0|1|A|G|1574
5LI0|1|A|A|1575
5LI0|1|A|A|1576
5LI0|1|A|G|1577
5LI0|1|A|A|1578
5LI0|1|A|C|1579
5LI0|1|A|A|1580
5LI0|1|A|U|1581
5LI0|1|A|U|1582
5LI0|1|A|G|1583
5LI0|1|A|A|1584
5LI0|1|A|G|1585
5LI0|1|A|U|1586
5LI0|1|A|C|1587
5LI0|1|A|U|1588
5LI0|1|A|U|1589
5LI0|1|A|C|1590
5LI0|1|A|G|1591
5LI0|1|A|A|1592
5LI0|1|A|G|1593
5LI0|1|A|U|1594
5LI0|1|A|C|1595
5LI0|1|A|G|1596
5LI0|1|A|U|1597
5LI0|1|A|U|1598
5LI0|1|A|G|1599
5LI0|1|A|A|1600
5LI0|1|A|U|1601
5LI0|1|A|U|1602
5LI0|1|A|U|1603

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L17

Coloring options:

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