IL_5LI0_181

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CUACC

Length

8 nucleotides

Bulged bases

5LI0|1|A|A|2466, 5LI0|1|A|C|2467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_181 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.3648

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|A|G|2097
5LI0|1|A|A|2098
5LI0|1|A|G|2099
*
5LI0|1|A|C|2464
5LI0|1|A|U|2465
5LI0|1|A|A|2466
5LI0|1|A|C|2467
5LI0|1|A|C|2468

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2