IL_5LI0_198

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUU*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LI0_198 not in the Motif Atlas

Geometric match to IL_4X4N_005

Geometric discrepancy: 0.1872

The information below is about IL_4X4N_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LI0|1|A|A|2123
5LI0|1|A|U|2124
5LI0|1|A|U|2125
*
5LI0|1|A|G|2218
5LI0|1|A|C|2219
5LI0|1|A|U|2220

Current chains

Chain A

23S ribosomal RNA

Nearby chains