IL_5LJ5_002

3D structure

PDB id

5LJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Overall structure of the yeast spliceosome immediately after branching.

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CAGAUCAAU*ACAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LJ5|1|U|C|12
5LJ5|1|U|A|13
5LJ5|1|U|G|14
5LJ5|1|U|A|15
5LJ5|1|U|U|16
5LJ5|1|U|C|17
5LJ5|1|U|A|18
5LJ5|1|U|A|19
5LJ5|1|U|U|20
*
5LJ5|1|U|A|132
5LJ5|1|U|C|133
5LJ5|1|U|A|134
5LJ5|1|U|G|135
5LJ5|1|U|G|136

Current chains

Chain U

U5 snRNA (small nuclear RNA)

Nearby chains

Chain b

Small nuclear ribonucleoprotein-associated protein B

Chain h

Small nuclear ribonucleoprotein Sm D1