IL_5LJ5_006
3D structure
- PDB id
- 5LJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Overall structure of the yeast spliceosome immediately after branching.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- UCC*GA
- Length
- 5 nucleotides
- Bulged bases
- 5LJ5|1|V|C|66
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LJ5|1|V|U|65
5LJ5|1|V|C|66
5LJ5|1|V|C|67
*
5LJ5|1|V|G|81
5LJ5|1|V|A|82
Current chains
- Chain V
- U6 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- Exon 1 (5' exon) of UBC4 pre-mRNA
- Chain I
- Intron of UBC4 pre-mRNA
- Chain J
- Pre-mRNA-splicing factor PRP46
- Chain K
- Pre-mRNA-processing protein 45
- Chain N
- Pre-mRNA-splicing factor SLT11
- Chain O
- Pre-mRNA-splicing factor CEF1
- Chain P
- CWC15
- Chain S
- Pre-mRNA-splicing factor CLF1
Coloring options: