IL_5LJ5_014
3D structure
- PDB id
- 5LJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Overall structure of the yeast spliceosome immediately after branching.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- UCUUAUUUA*UAUCUG
- Length
- 15 nucleotides
- Bulged bases
- 5LJ5|1|I|A|62, 5LJ5|1|I|U|63, 5LJ5|1|I|U|64, 5LJ5|1|I|U|65, 5LJ5|1|Z|C|41
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LJ5|1|I|U|58
5LJ5|1|I|C|59
5LJ5|1|I|U|60
5LJ5|1|I|U|61
5LJ5|1|I|A|62
5LJ5|1|I|U|63
5LJ5|1|I|U|64
5LJ5|1|I|U|65
5LJ5|1|I|A|66
*
5LJ5|1|Z|U|38
5LJ5|1|Z|A|39
5LJ5|1|Z|U|40
5LJ5|1|Z|C|41
5LJ5|1|Z|U|42
5LJ5|1|Z|G|43
Current chains
- Chain I
- Intron of UBC4 pre-mRNA
- Chain Z
- U2 snRNA (small nuclear RNA)
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain D
- Protein CWC16
- Chain F
- Pre-mRNA-splicing factor CWC25
- Chain G
- Pre-mRNA-splicing factor ISY1
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