IL_5LL6_014

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

5LL6|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_014 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.2329

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5LL6|1|2|G|204
5LL6|1|2|U|205
5LL6|1|2|A|206
*
5LL6|1|2|U|259
5LL6|1|2|U|260
5LL6|1|2|U|261
5LL6|1|2|U|262
5LL6|1|2|C|263

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain V

40S ribosomal protein S8-A