IL_5LL6_047

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5LL6|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3272

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5LL6|1|2|U|893
5LL6|1|2|U|894
5LL6|1|2|G|895
5LL6|1|2|U|896
5LL6|1|2|C|897
5LL6|1|2|A|898
5LL6|1|2|G|899
*
5LL6|1|2|C|910
5LL6|1|2|U|911
5LL6|1|2|U|912
5LL6|1|2|G|913
5LL6|1|2|G|914
5LL6|1|2|A|915
5LL6|1|2|U|916
5LL6|1|2|U|917
5LL6|1|2|U|918
5LL6|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A