IL_5LL6_070

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5LL6|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_070 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.1309

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5LL6|1|2|G|616
5LL6|1|2|U|617
5LL6|1|2|U|618
5LL6|1|2|A|619
5LL6|1|2|A|620
5LL6|1|2|A|621
5LL6|1|2|A|622
*
5LL6|1|2|U|1104
5LL6|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S26-A