IL_5LMN_018

3D structure

PDB id

5LMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMN_018 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1097

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LMN|1|A|G|446
5LMN|1|A|G|447
5LMN|1|A|A|448
5LMN|1|A|C|449
5LMN|1|A|G|450
*
5LMN|1|A|C|483
5LMN|1|A|G|484
5LMN|1|A|G|485
5LMN|1|A|U|486
5LMN|1|A|A|487
5LMN|1|A|C|488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16