IL_5LMN_055

3D structure

PDB id

5LMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMN_055 not in the Motif Atlas

Geometric match to IL_1UN6_005

Geometric discrepancy: 0.1443

The information below is about IL_1UN6_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5LMN|1|A|G|1405
5LMN|1|A|U|1406
5LMN|1|A|C|1407
*
5LMN|1|A|G|1494
5LMN|1|A|U|1495
5LMN|1|A|C|1496

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain W

Translation initiation factor IF-1

Chain X

Translation initiation factor IF-3

Chain Y

mRNA