IL_5LMP_017

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMP_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1238

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LMP|1|A|G|409
5LMP|1|A|G|410
5LMP|1|A|A|411
5LMP|1|A|A|412
5LMP|1|A|G|413
5LMP|1|A|A|414
5LMP|1|A|A|415
5LMP|1|A|G|416
*
5LMP|1|A|U|427
5LMP|1|A|G|428
5LMP|1|A|U|429
5LMP|1|A|A|430
5LMP|1|A|A|431
5LMP|1|A|A|432
5LMP|1|A|C|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4