IL_5LMP_020
3D structure
- PDB id
- 5LMP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.35 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMP_020 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1327
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
5LMP|1|A|C|504
5LMP|1|A|G|505
5LMP|1|A|G|506
5LMP|1|A|C|507
5LMP|1|A|C|508
5LMP|1|A|A|509
5LMP|1|A|A|510
5LMP|1|A|C|511
*
5LMP|1|A|G|540
5LMP|1|A|G|541
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
Coloring options: