IL_5LMP_036

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5LMP|1|A|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMP_036 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1451

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5LMP|1|A|G|925
5LMP|1|A|G|926
5LMP|1|A|G|927
*
5LMP|1|A|U|1390
5LMP|1|A|U|1391

Current chains

Chain A

16S rRNA

Nearby chains

Chain Y

mRNA