IL_5LMP_050

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMP_050 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2205

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5LMP|1|A|C|1259
5LMP|1|A|C|1260
5LMP|1|A|A|1261
5LMP|1|A|C|1262
*
5LMP|1|A|G|1273
5LMP|1|A|G|1274
5LMP|1|A|A|1275
5LMP|1|A|G|1276

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

30S ribosomal protein Thx