IL_5LMQ_017

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMQ_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1186

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LMQ|1|A|G|409
5LMQ|1|A|G|410
5LMQ|1|A|A|411
5LMQ|1|A|A|412
5LMQ|1|A|G|413
5LMQ|1|A|A|414
5LMQ|1|A|A|415
5LMQ|1|A|G|416
*
5LMQ|1|A|U|427
5LMQ|1|A|G|428
5LMQ|1|A|U|429
5LMQ|1|A|A|430
5LMQ|1|A|A|431
5LMQ|1|A|A|432
5LMQ|1|A|C|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4