IL_5LMQ_033

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMQ_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0832

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5LMQ|1|A|C|779
5LMQ|1|A|A|780
5LMQ|1|A|A|781
5LMQ|1|A|A|782
5LMQ|1|A|C|783
*
5LMQ|1|A|G|799
5LMQ|1|A|G|800
5LMQ|1|A|U|801
5LMQ|1|A|A|802
5LMQ|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11