IL_5LMQ_058

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMQ_058 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.1833

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

5LMQ|1|A|G|1416
5LMQ|1|A|G|1417
5LMQ|1|A|A|1418
5LMQ|1|A|G|1419
*
5LMQ|1|A|U|1481
5LMQ|1|A|G|1482
5LMQ|1|A|A|1483
5LMQ|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12