IL_5LMR_002

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

5LMR|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMR_002 not in the Motif Atlas

Homologous match to IL_4LFB_002

Geometric discrepancy: 0.1662

The information below is about IL_4LFB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

5LMR|1|A|G|44
5LMR|1|A|U|45
*
5LMR|1|A|G|396
5LMR|1|A|A|397
5LMR|1|A|C|398

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16