3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
UAGU*AG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMR_012 not in the Motif Atlas
Homologous match to IL_4LFB_012
Geometric discrepancy: 0.219
The information below is about IL_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47074.2
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

5LMR|1|A|U|249
5LMR|1|A|A|250
5LMR|1|A|G|251
5LMR|1|A|U|252
*
5LMR|1|A|A|274
5LMR|1|A|G|275

Current chains

Chain A
16S rRNA

Nearby chains

Chain Q
30S ribosomal protein S17

Coloring options:


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