IL_5LMR_033

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMR_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1251

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5LMR|1|A|C|779
5LMR|1|A|A|780
5LMR|1|A|A|781
5LMR|1|A|A|782
5LMR|1|A|C|783
*
5LMR|1|A|G|799
5LMR|1|A|G|800
5LMR|1|A|U|801
5LMR|1|A|A|802
5LMR|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain X

Translation initiation factor IF-3