IL_5LMR_054

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMR_054 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.152

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5LMR|1|A|G|1405
5LMR|1|A|U|1406
5LMR|1|A|C|1407
*
5LMR|1|A|G|1494
5LMR|1|A|U|1495
5LMR|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

Translation initiation factor IF-1

Chain X

Translation initiation factor IF-3