IL_5LMR_055

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5LMR|1|A|A|1492, 5LMR|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMR_055 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2012

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

5LMR|1|A|C|1407
5LMR|1|A|A|1408
5LMR|1|A|C|1409
*
5LMR|1|A|G|1491
5LMR|1|A|A|1492
5LMR|1|A|A|1493
5LMR|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

Translation initiation factor IF-1

Chain X

Translation initiation factor IF-3