IL_5LMR_056
3D structure
- PDB id
- 5LMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.45 Å
Loop
- Sequence
- CAUG*UGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMR_056 not in the Motif Atlas
- Homologous match to IL_6CZR_168
- Geometric discrepancy: 0.5147
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
5LMR|1|A|C|1412
5LMR|1|A|A|1413
5LMR|1|A|U|1414
5LMR|1|A|G|1415
*
5LMR|1|A|U|1485
5LMR|1|A|G|1486
5LMR|1|A|G|1487
5LMR|1|A|G|1488
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain W
- Translation initiation factor IF-1
Coloring options: