3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
CAUG*UGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMR_056 not in the Motif Atlas
Homologous match to IL_6CZR_168
Geometric discrepancy: 0.5147
The information below is about IL_6CZR_168
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67743.1
Basepair signature
cWW-cWW-cWH-cWW
Number of instances in this motif group
9

Unit IDs

5LMR|1|A|C|1412
5LMR|1|A|A|1413
5LMR|1|A|U|1414
5LMR|1|A|G|1415
*
5LMR|1|A|U|1485
5LMR|1|A|G|1486
5LMR|1|A|G|1487
5LMR|1|A|G|1488

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain W
Translation initiation factor IF-1

Coloring options:


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