IL_5LMS_017

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMS_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1281

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LMS|1|A|G|409
5LMS|1|A|G|410
5LMS|1|A|A|411
5LMS|1|A|A|412
5LMS|1|A|G|413
5LMS|1|A|A|414
5LMS|1|A|A|415
5LMS|1|A|G|416
*
5LMS|1|A|U|427
5LMS|1|A|G|428
5LMS|1|A|U|429
5LMS|1|A|A|430
5LMS|1|A|A|431
5LMS|1|A|A|432
5LMS|1|A|C|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4