IL_5LMS_055

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5LMS|1|A|A|1492, 5LMS|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMS_055 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2071

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5LMS|1|A|C|1407
5LMS|1|A|A|1408
5LMS|1|A|C|1409
*
5LMS|1|A|G|1491
5LMS|1|A|A|1492
5LMS|1|A|A|1493
5LMS|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

Translation initiation factor IF-1

Chain X

Translation initiation factor IF-3

Chain Y

mRNA