IL_5LMS_062

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUGAAAGAC*GGGGAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMS|1|A|G|604
5LMS|1|A|U|605
5LMS|1|A|G|606
5LMS|1|A|A|607
5LMS|1|A|A|608
5LMS|1|A|A|609
5LMS|1|A|G|610
5LMS|1|A|A|611
5LMS|1|A|C|612
*
5LMS|1|A|G|628
5LMS|1|A|G|629
5LMS|1|A|G|630
5LMS|1|A|G|631
5LMS|1|A|A|632
5LMS|1|A|G|633
5LMS|1|A|C|634

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain H

30S ribosomal protein S8

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17