IL_5LMS_066

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

5LMS|1|A|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMS_066 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.2215

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5LMS|1|A|U|249
5LMS|1|A|A|250
5LMS|1|A|G|251
5LMS|1|A|U|252
*
5LMS|1|A|A|274
5LMS|1|A|G|275

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17