IL_5LMT_017

3D structure

PDB id

5LMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.15 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMT_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1204

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LMT|1|A|G|409
5LMT|1|A|G|410
5LMT|1|A|A|411
5LMT|1|A|A|412
5LMT|1|A|G|413
5LMT|1|A|A|414
5LMT|1|A|A|415
5LMT|1|A|G|416
*
5LMT|1|A|U|427
5LMT|1|A|G|428
5LMT|1|A|U|429
5LMT|1|A|A|430
5LMT|1|A|A|431
5LMT|1|A|A|432
5LMT|1|A|C|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4